Author

Francesco Paolo Panei

Centre National de la Recherche ScientifiqueORCID 0000-0002-6272-9126Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Assay:protein structure· 3 Approach:statistical model· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:protein folding & dynamics· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Massimiliano BonomiiD· 3 shared Paraskevi GkekaiD· 2 shared Hervé MénageriD· 1 shared Kaushik BorthakuriD· 1 shared Paul RobustelliiD· 1 shared Rachel TorchetiD· 1 shared Thomas R. SiskiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 12 mutual co-author links

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3 shared papersBioinformatics

Massimiliano BonomiORCID

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3 papers

Recent·Most cited

BiophysicsNature CommunicationsPeer-reviewedOct 10, 2025

Determining accurate conformational ensembles ofintrinsically disordered proteins at atomic resolution

Kaushik Borthakur, Thomas R. Sisk, Francesco Paolo Panei…·Paul Robustelli

This study develops a method to determine accurate atomic resolution conformational ensembles of intrinsically disordered proteins by integrating MD simulations with experimental data using maximum entropy reweighting.

33 citationstop 1%

protein structuredeep learning

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BioinformaticsNature CommunicationsPeer-reviewedJul 8, 2024

Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN

Francesco Paolo Panei, Paraskevi Gkeka, Massimiliano Bonomi

SHAMAN identifies small-molecule binding sites in RNA conformational ensembles using molecular dynamics and enhanced-sampling techniques, successfully detecting experimentally resolved pockets in benchmark tests.

40 citationstop 3%

protein structurestatistical model

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BioinformaticsBioinformaticsPeer-reviewedJul 7, 2022

HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design

Francesco Paolo Panei, Rachel Torchet, Hervé Ménager…·Massimiliano Bonomi

HARIBOSS is a curated database of RNA-small molecule structures to support rational drug design by providing insights into RNA-ligand interactions.

63 citationstop 4%

protein structureexperimental assay

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