Nanopore long-read only genome assembly of clinical Enterobacterales isolates is complete and accurate
Dorottya Nagy, Valentina Pennetta, Gillian Rodger, Katie M.V. Hopkins, Christopher R. Jones, Susan Hopkins, Derrick W. Crook, Ann Sarah Walker, Julie V. Robotham, Katie L. Hopkins, Alice Ledda, David F. Williams, Russell Hope, Colin Stewart Brown, Nicole E Stoesser, Samuel Lipworth
This study evaluates Nanopore long-read only genome assembly for clinical Enterobacterales isolates, finding Autocycler with Medaka polishing achieves accuracy comparable to hybrid assemblies.
Microbial Genomics · Feb 27, 2026Peer-reviewedBioinformatics