Chuanyi Zhang

This paper introduces a method to infer clonal trees from ultra-low coverage single-cell DNA sequencing data of tumors, showing improved accuracy in uncovering clonal structure and genotypes.

Jumper improves transcript assembly for Nidovirales by addressing discontinuous transcription, outperforming existing methods and identifying non-canonical transcripts.

CORSID identifies transcription regulatory sequences and genes in unannotated coronavirus genomes without prior information.

VEF is a variant filtering tool using ensemble methods that outperforms existing tools like VQSR and HF, with faster runtime and better generalization.