Erika L. Cyphert

This study validates a high-throughput stool-derived in vitro culture model for antibiotic-altered gut microbiomes using shotgun metagenomic sequencing.

This study investigates sex-specific differences in microbial, metabolic, and immune responses to antibiotic exposure using a multi-omics approach in mice.

The paper tracks antibiotic resistance gene (ARG) dynamics in mice during long-term antibiotic treatment, finding that commensal bacteria reduce ARG burden by outcompeting resistant taxa.

The paper characterizes microbial differences in oyster reef ecosystems by analyzing abundance and diversity across soil, biofilm, and oysters in four sites, identifying distinct taxa and their associations with environmental factors.