Author

Avani Tantry

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Erika L. CyphertiD· 2 shared Julielam Tran· 2 shared Weimiao Long· 2 shared Bernhard Ørn PalssoniD· 1 shared Brian Ton· 1 shared Brianna Rodriguez· 1 shared Carter FaucheriD· 1 shared Delina Kambo· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersMicrobiology

Erika L. CyphertORCID

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Author profile →

3 papers

Recent·Most cited

Validating a high-throughput in vitro model for culturing antibiotic-altered microbiome communities

Weimiao Long, Avani Tantry, Julielam Tran, Erika L. Cyphert

This study validates a high-throughput stool-derived in vitro culture model for antibiotic-altered gut microbiomes using shotgun metagenomic sequencing.

bioRxiv · Sep 18, 2026 · PreprintMicrobiology

Exploratory multi-omics analysis reveals sex-specific differences in microbial response to antibiotic exposure

Avani Tantry, Weimiao Long, Julielam Tran, Sidhant Rohatgi, Erika L. Cyphert

This study investigates sex-specific differences in microbial, metabolic, and immune responses to antibiotic exposure using a multi-omics approach in mice.

bioRxiv · Sep 1, 2026 · PreprintMicrobiology

QSProteome: A Community-Driven Interactive Platform for Large-Scale Exploration and Evaluation of Predicted Protein Complex Structures.

Edward Catoiu, Delina Kambo, Brianna Rodriguez, Krista Vear, Ziheng Wang, June Akpata, Jaladhi Shah, Rayyan Ayoub, Matthew Hofmann, Keerthana Ananda, Avani Tantry, Ishita Gupta, Robin Anwyl, Carter Faucher, Jordan Nichols, , Bernhard Ørn Palsson

QSProteome provides a platform for modeling, evaluating, and refining predicted protein complex structures, enabling community-driven exploration and refinement of over 42,000 genes.

Nucleic Acids Research · Oct 8, 2025Peer-reviewedBioinformatics