Author

Shoko Kawamoto

National Institute of GeneticsORCID 0000-0002-6404-3443Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:plant (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Yasukazu NakamuraiD· 3 shared Atsushi ToyodaiD· 2 shared Bhim B. BiswaiD· 2 shared Kazumichi FujiwaraiD· 2 shared Momi TsurutaiD· 2 shared Noriko Kimura· 2 shared Takushi KishidaiD· 2 shared Toshio KatsukiiD· 2 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Yasukazu NakamuraORCID

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3 papers

Recent·Most cited

Chromosome-scale genomes of two wild flowering cherrys (Cerasus itosakura and C. jamasakura) provide insights into structural evolution in Prunus

Kazumichi Fujiwara, Atsushi Toyoda, Toshio Katsuki, Yutaka Sato, Bhim B. Biswa, Takushi Kishida, Momi Tsuruta, Yasukazu Nakamura, Takako Mochizuki, Noriko Kimura, Shoko Kawamoto, Tazro Ohta, Ken–Ichi Nonomura, Hironori Niki, Hiroyuki Yano, , Tsuyoshi Koide

The paper presents chromosome-level genome assemblies for two wild cherry species, revealing structural variations and insights into their evolutionary relationships.

bioRxiv · Aug 30, 2025 · PreprintGenomics

Empowering medaka fish biology with versatile genomic resources in MedakaBase

Kenji Morikami, Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Shoko Kawamoto, Yasukazu Nakamura, Katsushi Yamaguchi, Shuji Shigenobu, Kiyoshi Naruse, Satoshi Ansai, Shigehiro Kuraku

MedakaBase provides a centralized platform for genomic resources and analysis tools for medaka fish, including gene models and omics data for multiple Oryzias species.

bioRxiv · May 13, 2025 · PreprintGenomics

Decoding the Centromeric Region with a Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa

Kazumichi Fujiwara, Atsushi Toyoda, Bhim B. Biswa, Takushi Kishida, Momi Tsuruta, Yasukazu Nakamura, Noriko Kimura, Shoko Kawamoto, Yutaka Sato, Toshio Katsuki, Tsuyoshi Koide

The paper presents a near complete genome assembly of the Oshima cherry, identifies centromeric regions, and compares them with related species to study genetic diversity and evolution.

bioRxiv · Jun 17, 2024 · PreprintGenomics