Author

Berk Turhan

Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York NY; Tri-Institutional PhD Program in Computational Biology and Medicine, Weill Cornell Graduate School of Medical Sciences, New York NY;ORCID 0000-0002-6471-0357Unclaimed ORCID profile · follow to get notified of new preprints

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Berk Turhan1 paper · Cornell University

Biology Disciplines

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Genetics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Ann Le· 2 shared Danwei HuangfuiD· 2 shared Hanbyul Lee· 2 shared Kushal K. DeyiD· 2 shared Arpan Ghosh· 1 shared Aylin BırcaniD· 1 shared Berkay SelçukiD· 1 shared Breanna Williams· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersGenetics

Ann Le

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintNov 4, 2026

Perturbation-induced gene programs map the hidden regulatory architecture of complex diseases

Berk Turhan, Hanbyul Lee, Dingyu Liu…·Kushal K. Dey

This paper introduces Perturbscape, a framework that uses perturbation-induced gene programs to identify disease-relevant genes and pathways, showing higher heritability informativeness than steady-state approaches.

DOI 10.64898/2026.11.03.762080

humanscRNA-seq

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GeneticsbioRxivPreprintJun 16, 2026

A dish-to-biobank framework links β-cell nutrient-stress programs to genetic and dietary risk for Type 2 Diabetes

Xianming Wang, Hanbyul Lee, Ann Le…·Kushal K. Dey

DOI 10.64898/2026.06.12.731989

humanscRNA-seq

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GenomicsTURKISH JOURNAL OF BIOLOGYPeer-reviewedJun 9, 2020

Phylogenetic Analysis of SARS-CoV-2 Genomes in Turkey

Ogün Adebalı, Aylin Bırcan, Defne Çırcı…·Berk Turhan

The paper analyzes SARS-CoV-2 genomes from Turkey to trace the virus's introduction and spread, identifying multiple international introductions and a transmission hub.

20 citations

viruswhole-genome sequencing

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