Author

Charles Paperman

Centre National de la Recherche ScientifiqueORCID 0000-0002-6658-5238Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:rat· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Camille MarchetiD· 2 shared Igor MartayaniD· 2 shared Antoine LimassetiD· 1 shared Bastien CazauxiD· 1 shared Bastien Degardins· 1 shared Bede ConstantinidesiD· 1 shared Léa VandammeiD· 1 shared Loup LobetiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 14 mutual co-author links

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2 shared papersBioinformatics

Camille MarchetORCID

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3 papers

Recent·Most cited

BioinformaticsPeer Community JournalPeer-reviewedJun 17, 2026

Accelerating k-mer-based sequence filtering

Igor Martayan, Léa Vandamme, Bede Constantinides…·Antoine Limasset

The paper introduces K2Rmini, a tool that efficiently filters sequences based on k-mer matches, achieving 2 Gbp/s on a consumer laptop.

1 citation

long-read sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 22, 2026

Helicase: Vectorized parsing and bitpacking of genomic sequences

Igor Martayan, Loup Lobet, Camille Marchet, Charles Paperman

Helicase provides a fast, vectorized parser for FASTA/Q files, outperforming existing libraries by leveraging SIMD and efficient bitpacking.

1 citation

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 19, 2025

The Vizitig pangenome and pantranscriptome explorer

Bastien Degardins, Charles Paperman, Camille Marchet

Vizitig is a platform for real-time exploration of DNA and RNA de Bruijn graphs across samples, enabling efficient querying and analysis of pangenomic and pantranscriptomic data.

3 citations

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