Author

Shaowei An

Fudan UniversityORCID 0000-0002-6658-9386Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 4 Approach:statistical model· 4 Assay:metabolomics· 3 Research Focus:software / tool· 3 Research Focus:database / resource· 2 Assay:metagenomics· 2 Approach:experimental assay· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Changbin Brad YuiD· 5 shared Miaoshan LuiD· 5 shared Jinyin WangiD· 4 shared Ruimin WangiD· 4 shared Junjie TongiD· 3 shared Cong XieiD· 2 shared Hengxuan JiangiD· 2 shared Jiawei WangiD· 1 shared

Activity by Year

2020-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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5 shared papersBioinformatics

Changbin Brad YuORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

How much storage precision can be lost: Guidance for near-lossless compression of untargeted metabolomics mass spectrometry data

Junjie Tong, Miaoshan Lu, Ruimin Wang, Shaowei An, Jinyin Wang, Tong Wang, Cong Xie, Changbin Brad Yu

The paper evaluates precision loss in metabolomics mass spectrometry data compression and provides thresholds to minimize impact on downstream analysis.

Journal of Proteome Research · Apr 19, 2024Peer-reviewedBioinformatics

Entropy-based decoy generation methods for accurate FDR estimation in large-scale metabolomics annotations.

Shaowei An, Miaoshan Lu, Ruimin Wang, Jinyin Wang, Cong Xie, Junjie Tong, Hengxuan Jiang, Changbin Brad Yu

This paper introduces entropy-based decoy generation methods to improve FDR estimation in metabolomics and presents a tool for accurate FDR-controlled analysis.

bioRxiv · Jul 2, 2023 · PreprintBioinformatics

Aird-ComboComp: A combinable compressor framework with a dynamic-decider for lossy mass spectrometry data compression

Miaoshan Lu, Junjie Tong, Ruimin Wang, Shaowei An, Jinyin Wang, Changbin Brad Yu

The paper introduces Aird-ComboComp, a compression framework for mass spectrometry data that improves compression ratios and decompression speed compared to existing methods.

bioRxiv · May 4, 2023 · PreprintBioinformatics

InjectionDesign: Plate Design with Optimized Stratified Block Randomization for Modern LC/GC-MS-Based Sample Preparation

Miaoshan Lu, Hengxuan Jiang, Ruiming Wang, Shaowei An, Jiawei Wang, Changbin Brad Yu

InjectionDesign provides an online plate design service for GC/LC-MS-based experiments with optimized stratified block randomization.

bioRxiv · Feb 26, 2023 · PreprintBioinformatics

Aird: A computation-oriented mass spectrometry data format enables higher compression ratio and less decoding time

Miaoshan Lu, Shaowei An, Ruimin Wang, Jinyin Wang, Changbin Brad Yu

Aird is a computation-oriented mass spectrometry data format that achieves higher compression and faster decoding compared to existing formats.

bioRxiv · Oct 14, 2020 · PreprintBioinformatics