Reply to: Caution Regarding the Specificities of Pan-Cancer Microbial Structure
Gregory D. Sepich‐Poore, Evguenia Kopylova, Qiyun Zhu, Carolina S. Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kościółek, Stefan Janssen, Jessica L. Metcalf, Se Jin Song, Jad N. Kanbar, Sandrine Miller‐Montgomery, Robert K. Heaton, Rana R. McKay, Sandip Pravin Patel, , Rob D. Knight
The authors reanalyze their pan-cancer microbiome findings using decontaminated data to address concerns about contamination, batch effects, and machine learning approaches.
bioRxiv · Feb 10, 2023 · PreprintBioinformatics