Author

Kaddour Chabane

Hospices Civils de LyonORCID 0000-0002-6715-5133Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Claire BardeliD· 2 shared Sandrine HayetteiD· 2 shared Sarah HuetiD· 2 shared Sylvain MareschaliD· 2 shared Béatrice GrangeiD· 1 shared Camille LéonceiD· 1 shared Franck Emmanuel NicoliniiD· 1 shared Gilles SallesiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersBioinformatics

Claire BardelORCID

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2 papers

Recent·Most cited

Detecting aberrant splicing events in short-read RNA-seq with SAMI, an UMI-aware Nextflow pipeline

Sylvain Mareschal, Valentin Wucher, Sarah Huet, Camille Léonce, Kaddour Chabane, Sandrine Hayette, Pierre‐Paul Bringuier, S. Pinson, Marc Barritault, Claire Bardel

SAMI detects aberrant splicing events in short-read RNA-seq by focusing on non-recurring events in low-dimension data using a UMI-aware pipeline.

bioRxiv · Mar 10, 2025 · PreprintBioinformatics

Performances of targeted RNA-sequencing for the analysis of fusion transcripts, gene mutation and expression in haematological malignancies.

Sandrine Hayette, Béatrice Grange, Maxime Vallée, Claire Bardel, Sarah Huet, Isabelle Mosnier, Kaddour Chabane, Thomas Simonet, Marie Balsat, Maël Heiblig, Isabelle Tigaud, Franck Emmanuel Nicolini, Sylvain Mareschal, Gilles Salles, Pierre Sujobert

This study evaluates targeted RNA sequencing for detecting fusion transcripts, mutations, and expression in hematological malignancies, finding it effective for diagnosing leukemia subtypes and identifying most DNA mutations at the mRNA level.

bioRxiv · Sep 7, 2020 · PreprintGenomics