Author

Yuki Shirakawa

RIKEN Nishina CenterORCID 0000-0002-6775-0952Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1 Approach:statistical model· 1

Frequent Co-Authors

Asanga Deshappriya Nagalla· 3 shared Tomoko AbeiD· 3 shared Hiroyuki Ichida· 2 shared Kinya ToriyamaiD· 2 shared Ryouhei MoritaiD· 2 shared Tadashi SatoiD· 2 shared Yoriko Hayashi· 2 shared Hiroki SaitoiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersPlant Biology

Asanga Deshappriya Nagalla

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3 papers

Recent·Most cited

Rice Jumonji706 confers the photoperiod sensitivity in rice by distinct regulation of short-day and long-day flowering time regulatory pathways.

Asanga Deshappriya Nagalla, Ryouhei Morita, Hiroyuki Ichida, Yoriko Hayashi, Yuki Shirakawa, Katsunori Ichinose, Tadashi Sato, Kinya Toriyama, Tomoko Abe

This study identifies JMJ706 as a gene regulating rice flowering time by modulating short-day and long-day pathways through histone demethylation.

bioRxiv · Mar 10, 2026 · PreprintPlant Biology

Arabidopsis aneuploidy mutant C30-81-as6, possesses enormous variations in multiple phenotypic characteristics.

Asanga Deshappriya Nagalla, Kotaro Ishii, Tomonari Hirano, Sumie Ohbu, Yuki Shirakawa, Yusuke Kazama, Tomoko Abe

The paper describes an aneuploid Arabidopsis mutant generated by ion beam mutagenesis, showing phenotypic variations and identifying candidate causal genes through transcriptome analysis.

bioRxiv · Sep 16, 2025 · PreprintGenetics

Identification of an early-heading mutant in Indonesian native rice cultivar: 'Gemdjah Beton'

Asanga Deshappriya Nagalla, Ryouhei Morita, Hiroyuki Ichida, Yoriko Hayashi, Yuki Shirakawa, Kazuki Ohshiro, Tadashi Sato, Yoshimichi Fukuta, Kinya Toriyama, Hiroki Saito, Yutaka Okumoto, Tomoko Abe

The paper identifies an early-heading mutant rice line, GB-10, and links its phenotype to a single nucleotide variant on chromosome 7 affecting Hd3a and RFT1 expression.

Ikushugaku zasshi · Jan 1, 2025Peer-reviewedPlant Biology