Author

Shinji Kikuchi

Chiba UniversityORCID 0000-0002-6776-7463Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Kenta ShirasawaiD· 3 shared Haruka KondoiD· 1 shared Hideaki IimuraiD· 1 shared Hideyuki TanabeiD· 1 shared Kazutoshi YoshitakeiD· 1 shared Kazuya Hara· 1 shared Kei UchidaiD· 1 shared Keiichiro KoiwaiiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersGenomics

Kenta ShirasawaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Genomic basis of rapid urban evolution revealed by the subgenome-resolved genome of octoploid Oxalis corniculata

Hideaki Iimura, Mitsuhiko P. Sato, Yuta Aoyagi Blue, Shinji Kikuchi, Yuuya Tachiki, Kei Uchida, Koki R. Katsuhara, Kiriko Hiraoka, Yuya Fukano, Kenta Shirasawa

This study reveals the genomic basis of urban adaptation in Oxalis corniculata by analyzing leaf color variation linked to heat tolerance using subgenome-resolved genome assemblies.

bioRxiv · Apr 27, 2026 · PreprintGenomics

Chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping technologies

Kenta Shirasawa, Kazutoshi Yoshitake, Haruka Kondo, Shinji Kikuchi, Keiichiro Koiwai, Sota Fujii

This study presents a chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping, revealing a genome twice the size of Arabidopsis thaliana.

DNA Research · Jan 8, 2026Peer-reviewedGenomics

B chromosome and its non-Mendelian inheritance in Atractylodes lancea

Kazuya Hara, Shinji Kikuchi, Misaki Inoue, Takahiro Tsusaka, Miki SAKURAI, Hideyuki Tanabe, Kenta Shirasawa, Sachiko Isobe

This study identifies B chromosomes in Atractylodes lancea and shows their non-Mendelian inheritance from female parents.

bioRxiv · May 27, 2024 · PreprintGenetics