Sachiko Isobe

The paper identifies a frameshift mutation in the UFO gene causing the marimo floral phenotype in gerbera by disrupting the LFY-UFO regulatory module.

The paper presents whole genome sequences of two elasmobranchs, analyzing genome size dynamics and genomic architecture, revealing correlations between chromosome size, repetitive elements, and gene duplication patterns.

This study applies genomic selection to improve medicinal compounds in red perilla, showing that GS-based crosses outperform phenotypic selection in target compound levels.

The paper investigates the molecular evolution of terpene synthase genes in Fagaceae, revealing convergent evolution of isoprene synthase activity in two lineages within subgenus Quercus.

This study fine-maps the RPc2 resistance locus in strawberries to 546 kb, identifies candidate genes, and reveals the genetic architecture and haplotype distribution of resistance to Phytophthora crown rot.

The paper presents a chromosome-level genome assembly of Gerbera hybrida using HiFi and Hi-C technologies, providing annotated nuclear, mitochondrial, and chloroplast genomes.

This study compares seasonal gene expression across four tree species, finding conserved winter rhythms and divergent summer patterns, suggesting a shared molecular calendar in winter.

This paper introduces CLCFM3, a photogrammetry algorithm for high-precision 3D plant modeling, addressing occlusion and noise in complex plant structures.

The paper identifies CYP76AD1 and 5GT as heat stress-downregulated genes affecting betalain biosynthesis in Amaranthus tricolor.

This study proposes a method to select optimal cross pairs in inter-population crosses by considering genetic effects across populations, showing increased genetic gains in multiple traits.

The paper identifies a frame-shift mutation in InCO causing early flowering in Japanese morning glory, which may have facilitated its northward expansion into temperate Asia.

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

The paper presents a high-quality chromosome-scale genome assembly for the American Shorthair domestic cat breed, improving upon previous fragmented assemblies.

The paper presents near-complete telomere-to-telomere genome assemblies for two Egyptian clover cultivars using long-read sequencing and a novel gap-targeted method.

This study uses LiDAR to measure tree traits and assess their heritability in larch trees, finding backpack LiDAR provides more accurate DBH estimates than UAV LiDAR.

Hayai-Annotation v3 provides a tool for functional gene prediction using orthologs and gene ontology, enhancing cross-species gene function analysis and visualization.

This study identifies B chromosomes in Atractylodes lancea and shows their non-Mendelian inheritance from female parents.

This study evaluates genomic selection and marker-assisted selection for improving medicinal compound production in red perilla using quantitative trait locus analysis and genomic prediction.

This study generates high-quality haplotype-resolved genome assemblies for four coniferous tree species using long-read sequencing, revealing high heterozygosity and facilitating genetic and breeding research.

The paper presents a telomere-to-telomere genome assembly of Echinochloa phyllopogon, revealing structural differences between its A and B genomes and their implications for herbicide resistance.

This paper benchmarks Hayai-Annotation Plants against Blast2GO and TRAPID using standard metrics, finding it outperforms both in gene ontology annotation for Arabidopsis thaliana.

The paper generates chromosome-scale and haploid-resolved genome assemblies for Citrus unshiu and its parental species using long-read sequencing and Hi-C, revealing structural differences and polymorphism variations.

The paper presents the first telomere-to-telomere genome assembly of matsutake, revealing genomic features and variations that provide a reference for future genetic and conservation studies.

The paper presents a chromosome-scale genome assembly for hexaploid sweetpotato, identifying genes involved in starch, anthocyanin, and carotenoid pathways.

This study presents a chromosome-scale genome assembly of the Japanese chili pepper landrace Capsicum annuum 'Takanotsume' using long-read sequencing and optical mapping, revealing genome structure variations compared to related species.

This paper presents the first genome sequence of the interspecific hybrid grape cultivar Shine Muscat, providing insights into its genome structure and gene content.

This study presents chromosome-scale haplotype-phased genome assemblies for male and female lines of wild asparagus, revealing genetic differences and potential sex determination mechanisms.

This study sequenced and analyzed the genomes of two early-flowering cherry varieties to identify genetic factors contributing to their early-flowering phenotype.

The paper generates and analyzes a draft genome sequence for horsegram, identifying specific genes and genome structure similarities with other legumes.