Author

My V. T. Phan

Erasmus MCORCID 0000-0002-6905-8513Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:variant calling· 2 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Organism:virus· 1

Frequent Co-Authors

Matthew L. CotteniD· 3 shared David L. RobertsoniD· 2 shared Charles MasembeiD· 1 shared Daniel Lule BugembeiD· 1 shared Ke YuaniD· 1 shared Kieran D. LambiD· 1 shared Martha M. LukaiD· 1 shared Megan Saathoff· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersGenomics

Matthew L. CottenORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

SARS-CoV-2's evolutionary capacity is mostly driven by host antiviral molecules

Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J Orton, My V. T. Phan, Matthew L. Cotten, Ke Yuan, David L. Robertson

The paper uses machine learning to identify mutational signatures in SARS-CoV-2 genomes and links them to host antiviral molecules, showing these drive most of the virus's evolutionary changes.

bioRxiv · Apr 7, 2023 · PreprintGenomics

Alternate primers for whole-genome SARS-CoV-2 sequencing

Matthew L. Cotten, Daniel Lule Bugembe, Pontiano Kaleebu, My V. T. Phan

The paper identifies genome gap frequencies in SARS-CoV-2 sequences and proposes an alternative primer set and sequencing scheme to improve genome coverage and quality.

Virus Evolution · Jan 1, 2021Peer-reviewedGenomics

Increased resolution of African Swine Fever Virus genome patterns based on profile HMM protein domains

Charles Masembe, My V. T. Phan, David L. Robertson, Matthew L. Cotten

The paper introduces a method using profile HMM domains to analyze ASFV genome diversity, identifying differences between virulent and attenuated strains.

Virus Evolution · Jun 11, 2020Peer-reviewedGenomics