Author

Christos Arvanitidis

Hellenic Centre for Marine ResearchORCID 0000-0002-6924-5255Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:experimental assay· 2 Assay:metagenomics· 1

Frequent Co-Authors

Christina PavloudiiD· 2 shared Aikaterini Vasileiadou· 1 shared Antonis Potirakis· 1 shared Cynthia S Parr· 1 shared Evagelos PafilisiD· 1 shared Evangelos PafilisiD· 1 shared Haris ZafeiropoulosiD· 1 shared Jennifer Hammock· 1 shared

Activity by Year

2014-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Christina PavloudiORCID

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2 papers

Recent·Most cited

PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis

Haris Zafeiropoulos, Quoc Viet Ha, Katerina Vasileiadou, Antonis Potirakis, Christos Arvanitidis, Pantelis Topalis, Christina Pavloudi, Evagelos Pafilis

PEMA streamlines metabarcoding analysis by containerizing tools for 16S rRNA and COI data, enabling efficient and customizable processing pipelines.

GigaScience · Mar 1, 2020Peer-reviewedBioinformatics

ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life

Evangelos Pafilis, Sune P Frankild, Julia Schnetzer, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Patrick Leary, Jennifer Hammock, Katja Schulz, Cynthia S Parr, Christos Arvanitidis, Lars Juhl Jensen

The paper develops a dictionary-based tagger to identify Environment Ontology terms in text and applies it to annotate species pages in the Encyclopedia of Life.

bioRxiv · Dec 23, 2014Bioinformatics