Evangelos Pafilis

The paper introduces S1000, a new corpus for species name recognition in biomedical text, achieving high accuracy with both deep learning and dictionary-based methods.

Arena3Dweb provides an interactive 3D visualization tool for multi-layered networks with clustering, directional connections, and integration capabilities.

OnTheFly2.0 automates biomedical entity recognition and analysis from documents, revealing inflammatory and senescence pathways in severe COVID-19.

The paper describes an updated text-mining tool, EXTRACT 2.0, designed to assist in the interactive annotation of biomedical named entities and ontology terms, improving usability and curation efficiency.

The paper develops a dictionary-based tagger to identify Environment Ontology terms in text and applies it to annotate species pages in the Encyclopedia of Life.