Author

Ye Yuan

Shanghai Jiao Tong UniversityORCID 0000-0002-6967-6856Unclaimed ORCID profile · follow to get notified of new preprints

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Ye Yuan3 papers · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:protein design· 1

Frequent Co-Authors

Bin LiuiD· 2 shared Cheng JiniD· 2 shared Hong‐Bin SheniD· 2 shared Xiaoyong PaniD· 2 shared Huiya HuangiD· 1 shared Jinxian HuiD· 1 shared Weixi LiaoiD· 1 shared Zhi-Rui Hu· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Bin LiuORCID

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3 papers

Recent·Most cited

AttSiOff: A self-attention-based approach on siRNA de-sign with inhibition and off-target effect prediction

Bin Liu, Ye Yuan, Xiaoyong Pan, Hong‐Bin Shen, Cheng Jin

AttSiOff improves siRNA design by predicting inhibition and off-target effects using self-attention mechanisms, achieving better accuracy and generalization than existing methods.

Med-X · Apr 23, 2024Peer-reviewedBioinformatics

DeepSipred: A deep-learning-based approach on siRNA inhibition prediction

Bin Liu, Huiya Huang, Weixi Liao, Xiaoyong Pan, Cheng Jin, Ye Yuan

DeepSipred predicts siRNA inhibition using sequence, thermodynamic, and expert knowledge features, achieving state-of-the-art performance on public datasets.

bioRxiv · Nov 2, 2023 · PreprintBioinformatics

SPRI: Spatial Pattern Recognition using Information based method for spatial gene expression data

Jinxian Hu, Zhi-Rui Hu, Ye Yuan, Hong‐Bin Shen

SPRI identifies spatially differential expressed genes by detecting dependencies between spatial coordinates and read counts without assuming a parametric model.

bioRxiv · Feb 9, 2022 · PreprintBioinformatics