Author

Hong Zhao

Houston MethodistORCID 0000-0002-6975-093XUnclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Hong Zhao3 papers · University of Washington

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Assay:imaging· 1 Approach:microscopy & imaging analysis· 1

Frequent Co-Authors

Stephen T.C. WongiD· 2 shared Anh-Vu Nguyen· 1 shared Arvind BhimarajiD· 1 shared Ashok VeeraraghavaniD· 1 shared Glori DasiD· 1 shared Hien V. Nguyen· 1 shared Hung Q. VoiD· 1 shared Huy Q. Vo· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Stephen T.C. WongORCID

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3 papers

Recent·Most cited

Interpretable computational SHG microscopy enables quantitative tissue phenotyping of cardiac remodeling in nonischemic heart failure

Reid Master, Wesley Poon, Rania Uzma, Stephan Bannikov, Muthu Kumar Krishnamoorthi, Ashok Veeraraghavan, HONG ZHAO, Arvind Bhimaraj, Raksha Raghunathan, Stephen TC Wong

The paper develops an interpretable computational SHG microscopy framework to classify cardiac remodeling states in mice with high accuracy.

bioRxiv · Oct 23, 2026 · PreprintBioengineering

CodeCytos: AI-assisted spatial molecular imaging analysis via code-augmented agent action space

Hung Q. Vo, Huy Q. Vo, Son T. Ly, Zhihao Wan, Anh-Vu Nguyen, Hong Zhao, Jianting Sheng, Stephen T.C. Wong, Hien V. Nguyen

CodeCytos improves spatial molecular imaging analysis by enabling dynamic, programmable interaction with tissue data, outperforming baseline approaches in custom feature exploration.

bioRxiv · Jun 3, 2026 · PreprintBioinformatics

Site-Specific Immune and Stromal Architecture Drive Resistance to Trastuzumab Deruxtecan in HER2+ Metastatic Breast Cancer

Glori Das, Matthew Vasquez, Jeffrey Zhang, Wei Yang, Yuan Gao, Xiaoxian Li, Hong Zhao, Stephen T.C. Wong

This study identifies immune and stromal factors driving resistance to Trastuzumab Deruxtecan in HER2+ metastatic breast cancer using spatial proteomics.

bioRxiv · May 23, 2025 · PreprintCancer Biology