Saritha Kodikara

phylobar provides an R package for interactive multiresolution compositional barplots to visualize hierarchical omics data, enabling exploration across taxonomic resolutions.

tensorOmics integrates longitudinal multi-omics data using tensor factorisation to capture coordinated molecular responses across time and omic layers.

This study integrates miRNomic and lipidomic analysis of plasma extracellular vesicles from AUD patients and controls to identify sex-based molecular signatures and their functional implications.

The paper identifies distinct microbial patterns and clusters associated with varying oral mucositis severity trajectories in head and neck cancer patients.

This paper introduces LUPINE, a method for inferring microbial networks in longitudinal studies, and validates it using simulated data and case studies.

This paper reviews simulation methods for microbiome data analysis, demonstrating their use in benchmarking, power analysis, and evaluating key properties of simulated data.