Author

Raquel L. Costa

Laboratório Nacional de Computação CientíficaORCID 0000-0002-7139-0865Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:human· 3 Research Focus:database / resource· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:graph neural network· 1

Frequent Co-Authors

Fabio Andre Machado PortoiD· 2 shared Luiz M. R. Gadelha Jr.iD· 2 shared Marcelo Alves SoaresiD· 2 shared Marcelo Ribeiro AlvesiD· 2 shared David L. RobertsoniD· 1 shared Jean‐Marc SchwartziD· 1 shared Mariana BoroniiD· 1 shared Mirela D’arciD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Fabio Andre Machado PortoORCID

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3 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedMar 22, 2024

HIHISIV: a database of gene expression in HIV and SIV host immune response

Raquel L. Costa, Luiz M. R. Gadelha Jr., Mirela D’arc…·Fabio Andre Machado Porto

HIHISIV is a database that integrates and provides tools to analyze gene expression data from HIV and SIV host immune responses in humans and nonhuman primates.

1 citation

humannon-human primate

Systems BiologyScientific ReportsPeer-reviewedOct 9, 2018

Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer

Raquel L. Costa, Mariana Boroni, Marcelo Alves Soares

This study identifies distinct co-expression networks in HPV+ and HPV- HNSCC using multi-omic data, revealing novel therapeutic targets and regulatory mechanisms.

37 citationstop 4%

humanbulk RNA-seq

BioinformaticsPeerJPeer-reviewedJul 5, 2017

GeNNet: An Integrated Platform for Unifying Scientific Workflow Management and Graph Databases for Transcriptome Data Analysis

Raquel L. Costa, Luiz M. R. Gadelha Jr., Marcelo Ribeiro Alves, Fabio Andre Machado Porto

GeNNet integrates scientific workflows with graph databases for transcriptome analysis, enabling gene selection, differential expression, and network reasoning.

16 citations

humanmouse