Author

Luiz Ladeira

University of LiègeORCID 0000-0002-7152-2688Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:software / tool· 2 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Assay:metabolomics· 1

Frequent Co-Authors

Anna NiarakisiD· 2 shared Bernard StaumontiD· 2 shared Laurence CalzoneiD· 2 shared Liesbet GerisiD· 2 shared Matthias KönigiD· 2 shared Noriko F. HiroiiD· 2 shared Adrien RougnyiD· 1 shared Ahmad VaeziD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersSystems Biology

Anna NiarakisORCID

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3 papers

Recent·Most cited

Systems BiologybioRxivPreprintJun 3, 2026

TabularQual: A spreadsheet-based format for annotating and curating logical models in SBML-qual

Luna Xingyu Li, Carissa Bleker, Sylvain Soliman…·John H. Gennari

TabularQual provides a spreadsheet-based format for annotating logical models, with tools to convert between spreadsheets and SBML-qual, enhancing model reuse and interoperability.

DOI 10.64898/2026.05.31.727710

database / resourcesoftware / tool

𝕏 PostBluesky

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams

Marie Corradi, Ivo Djidrovski, Luiz Ladeira…·Marek Ostaszewski

The paper describes the development and evaluation of an agentic framework using LLMs to explore molecular interaction maps through user-driven prototyping and testing.

DOI 10.1093/bioadv/vbag277

large language modelsoftware / tool

𝕏 PostBluesky

Systems BiologyFrontiers in MedicinePeer-reviewedOct 14, 2025

Molecular exploration of host-pathogen interactions in severe Pseudomonas aeruginosa infection through a multi-level data integration approach

Francesco Messina, Claudia Rotondo, Luiz Ladeira…·Carla Fontana

The paper integrates multi-omics data to explore host-pathogen interactions in severe Pseudomonas aeruginosa infection, identifying key molecular mechanisms and interactions.

3 citations

humanproteomics

𝕏 PostBluesky