Mark A. Arick

Four genome assemblies of new wild Gossypium hirsutum accessions from the Yucatan Peninsula, the center of domestication

The paper reports four new chromosome-level genome assemblies of wild Gossypium hirsutum from Yucatan, highlighting their genetic diversity and potential for improving cotton resistance traits.

Comparative population genomics of relictual Caribbean island Gossypium hirsutum

This study examines genetic diversity and population structure of wild and introgressed Gossypium hirsutum in Puerto Rico and Guadeloupe, revealing patterns of genetic variation and inbreeding.

Population Genomics Informs Conservation Strategies for Critically Endangered Kokia Species in Hawaii

This study uses population genomics to assess genetic diversity and structure in three critically endangered Kokia species in Hawaii, informing conservation strategies.

Assessment of the Genetic Diversity of Atlantic Bottlenose Dolphin (Tursiops truncatus) Strandings in the Mississippi Sound (USA)

This study assesses genetic diversity and population structure of Atlantic bottlenose dolphins in Mississippi Sound using whole mitogenomes from stranded animals, identifying four distinct populations.

A high-resolution model of gene expression during Gossypium hirsutum (cotton) fiber development

This study presents a high-resolution transcriptomic analysis of cotton fiber development, identifying key gene expression shifts and regulatory networks during secondary wall synthesis.

Genomic diversity and evolution in the Hawaiian Islands endemic Kokia (Malvaceae)

The paper provides genome assemblies for three extant Kokia species, revealing genetic diversity and divergence patterns in the Hawaiian Islands endemic genus.

A high-quality chromosome-level genome assembly of rohu carp, Labeo rohita, and its utilization in SNP-based exploration of gene flow and sex determination

The paper presents a high-quality chromosome-level genome assembly for rohu carp and uses it to explore gene flow and sex determination through SNP analysis.

Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification

The paper introduces an improved ddRAD-Seq protocol that enhances SNP identification efficiency and reduces time, validated against whole genome resequencing data.

The Gossypium herbaceum L. Wagad genome as a resource for understanding cotton domestication

The paper sequenced and analyzed the G. herbaceum cv Wagad genome to study domestication changes and gene expression in diploid cotton.

The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility

The paper presents a high-quality genome assembly of Gossypium anomalum and identifies genomic regions associated with hybrid lethality using synthetic allopolyploids.

The Gossypium stocksii genome as a novel resource for cotton improvement

The paper presents a high-quality genome sequence for Gossypium stocksii and compares it with G. somalense to explore pest resistance in cotton.

The Gossypium longicalyx genome as a resource for cotton breeding and evolution

The paper presents a high-quality genome assembly of Gossypium longicalyx to study reniform nematode immunity and fiber evolution in cotton.

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

The paper evaluates bioinformatic methods for quantifying homoeologous gene expression in polyploids using cotton transcriptomic data, finding that GSNAP-PolyCat provides the most accurate results and highlights methodological impacts on co-expression network analysis.