Pablo Carbonell‐Bejerano

Minimizing detection bias of somatic mutations in a highly heterozygous oak genome

The paper improves somatic mutation detection in a highly heterozygous oak genome by using a read assignment strategy, increasing the mutation rate estimate by fivefold.

In a nutshell: pistachio genome and kernel development

This study generates a chromosome-scale pistachio genome and analyzes kernel development stages to understand molecular pathways affecting nutritional quality.

Diploid genome assembly of the Malbec grapevine cultivar enables haplotype-aware analysis of transcriptomic differences underlying clonal phenotypic variation

The paper presents a diploid genome assembly for Malbec grapevine, enabling haplotype-aware transcriptomic analysis to uncover molecular bases of clonal phenotypic variation.

Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes

The paper compares HiFi and CLR long-read assemblies in Arabidopsis thaliana to assess centromere and rDNA cluster reconstruction, finding HiFi reduces gaps and enables gapless centromere assembly.

The H3K4me1 histone mark recruits DNA repair to functionally constrained genomic regions in plants

The paper shows H3K4me1 recruits DNA repair proteins to reduce mutations in functionally constrained regions of plant genomes.

Clonal propagation history shapes the intra-cultivar genetic diversity in Malbec grapevines

The paper analyzes genetic diversity in Malbec grapevines to show how clonal propagation history influences genetic variation across different clones.