Author

Arpita Joshi

Scripps Research InstituteORCID 0000-0002-7334-9671Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Approach:statistical model· 4 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Gustavo GlusmaniD· 2 shared Alexandra RalevskiiD· 1 shared Amy K. GleniD· 1 shared Ansh Vidyarthi· 1 shared Basazin BelhuiD· 1 shared Colleen XuiD· 1 shared Eduardo González· 1 shared Evan D. MorrisiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Gustavo GlusmanORCID

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Author profile →

4 papers

Recent·Most cited

Alcohol Use Disorder and Smoking-Associated Molecular Alterations in Human Prefrontal Cortex in Single Nucleus (sn) RNA-Seq

Arpita Joshi, Pietro Paolo Sanna

The paper identifies molecular alterations in the prefrontal cortex of individuals with alcohol use disorder and smoking, revealing distinct and combined pathway changes across cell types.

bioRxiv · Sep 29, 2026 · PreprintGenomics

Generating Biomedical Knowledge Graphs from Knowledge Bases, Registries, and Multiomic Data

Guangrong Qin, Kamileh Narsinh, Qi Wei, Jared C. Roach, Arpita Joshi, Skye L. Goetz, Sierra A. Taylor Moxon, Matthew Brush, Colleen Xu, Yao Yao, Amy K. Glen, Evan D. Morris, Alexandra Ralevski, Ryan T. Roper, Basazin Belhu, , Gustavo Glusman

The paper describes the transformation of multiomics and EHR data into privacy-preserving biomedical knowledge graphs within the Biomedical Data Translator ecosystem.

bioRxiv · Nov 14, 2024 · PreprintBioinformatics

Quality control of large genome datasets using genome fingerprints

Max Robinson, Arpita Joshi, Ansh Vidyarthi, Mary Maccoun, Sanjay Rangavajjhala, Gustavo Glusman

The paper evaluates seven versions of the 1000 Genomes Project genomes using genome fingerprinting, identifying quality issues and recommending best practices for dataset assessment.

bioRxiv · Dec 6, 2021 · PreprintGenomics

Characterizing Protein Conformational Spaces using Dimensionality Reduction and Algebraic Topology

Arpita Joshi, Nurit Haspel, Eduardo González

This work reduces high-dimensional protein conformational data using dimensionality reduction and topological analysis to identify distinct conformations and energy barriers.

bioRxiv · Nov 16, 2021 · PreprintBioinformatics