Author
Oregon State UniversityORCID 0000-0003-3691-2290Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Amy K. Glen, Drew Witherington, Trent Leslie…·Noa Rappaport
A Biolink-compliant graph (∼15 million nodes, ∼113 million edges) adds RefMet and LIPID MAPS metabolite and lipid classifications, plus polygenic score and clinical data element entities, to Translator content.
Skye L. Goetz, Amy K. Glen, Gwênlyn Glusman
The paper introduces MicrobiomeKG, a knowledge graph linking microbiome taxa, pathways, and host health, derived from published microbiome studies.
Amy K. Glen, Eric W. Deutsch, Stephen A. Ramsey
PloverDB provides a platform to serve biomedical knowledge graphs as standards-compliant web APIs, enhancing data accessibility and interoperability.
Guangrong Qin, Kamileh Narsinh, Qi Wei…·Gustavo Glusman
The paper describes the transformation of multiomics and EHR data into privacy-preserving biomedical knowledge graphs within the Biomedical Data Translator ecosystem.
Amy K. Glen, Chunyu Ma, Luis Mendoza…·David Koslicki
ARAX is a graph-based reasoning tool that integrates knowledge across sources to answer translational biomedical questions.
E. Carl Wood, Amy K. Glen, Lindsey G. Kvarfordt…·Stephen A. Ramsey
RTX-KG2 integrates 70 biomedical knowledge sources into a standards-compliant knowledge graph with a Biolink schema, providing downloadable and queryable versions via API.