Author

Ehsan Saleh

University of Illinois Urbana-ChampaignORCID 0000-0002-7482-0701Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:Bayesian inference· 1 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:protein sequence· 1

Frequent Co-Authors

Kelly J. BouchonvilleiD· 1 shared Michael NuteiD· 1 shared Remington E. SchmidtiD· 1 shared Saba GhaffariiD· 1 shared Saurabh SinhaiD· 1 shared Steven M. OfferiD· 1 shared Tandy J. WarnowiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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1 shared paperBioinformatics

Kelly J. BouchonvilleORCID

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2 papers

Recent·Most cited

A Robust Bayesian Approach to Bulk Gene Expression Deconvolution withNoisy Reference Signatures

Saba Ghaffari, Kelly J. Bouchonville, Ehsan Saleh, Remington E. Schmidt, Steven M. Offer, Saurabh Sinha

BEDwARS improves bulk gene expression deconvolution by estimating cell type proportions and signatures simultaneously, showing robustness to noisy references and identifying mechanisms in a rare pediatric condition.

bioRxiv · Oct 25, 2022 · PreprintBioinformatics

Benchmarking Statistical Multiple Sequence Alignment

Michael Nute, Ehsan Saleh, Tandy J. Warnow

This study benchmarks statistical multiple sequence alignment methods, finding BAli-Phy more accurate on simulated data but less accurate on biological benchmarks.

Systematic Biology · Oct 13, 2018Peer-reviewedBioinformatics