Author

Zongxin Yu

Northwestern UniversityORCID 0000-0002-7537-2322Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Research Focus:benchmarking· 1 Approach:diffusion model· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Guang LiniD· 2 shared Ming CheniD· 2 shared Yikai LiuiD· 2 shared Abhilash Ku SahooiD· 1 shared Richard J. LindsayiD· 1 shared Sonya M. HansoniD· 1 shared Wen JiangiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 18 mutual co-author links

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2 shared papersBiophysics

Guang LinORCID

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2 papers

Recent·Most cited

BiophysicsPRX LifePeer-reviewedJun 10, 2025

ExEnDiff: An Experiment-guided Diffusion model for protein conformational Ensemble generation

Yikai Liu, Zongxin Yu, Richard J. Lindsay…·Sonya M. Hanson

ExEnDiff generates protein conformations using experimental data as a prior, improving diversity and physical realism over existing methods.

27 citationstop 2%

protein structuredeep learning

𝕏 PostBluesky

BiochemistrybioRxivPreprintJan 19, 2025

ESMAdam: a plug-and-play all-purpose protein ensemble generator

Zongxin Yu, Yikai Liu, Guang Lin…·Ming Chen

ESMAdam generates protein conformation ensembles efficiently using ESMFold and ADAM optimization, reducing computational time and adapting to diverse restraint conditions.

4 citations

protein structuredeep learning

𝕏 PostBluesky