Author

Charlotte Tumescheit

Seoul National UniversityORCID 0000-0002-7563-5575Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:software / tool· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:metabolomics· 2 Assay:protein sequence· 2 Approach:benchmark study· 1 Approach:deep learning· 1

Frequent Co-Authors

Janna HastingsiD· 2 shared Adnan Malik· 1 shared Adriano RutziD· 1 shared Andrew E. FirthiD· 1 shared Björn GehrkeiD· 1 shared Cameron L. M. GilchristiD· 1 shared Fabian NeuhausiD· 1 shared Jeong-Jae LeeiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

Janna HastingsORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

ChEBI-N - Enrichment Analysis with the ChEBI Ontology

Miranda Carlsson, Björn Gehrke, Charlotte Tumescheit, Adriano Rutz, Adnan Malik, Noel M. O’Boyle, Nicola Zamboni, Janna Hastings

ChEBI-N performs ontology-based enrichment analysis on metabolomics data, identifying enriched chemical classes and demonstrating improved results with organism-specific backgrounds.

bioRxiv · Oct 20, 2026 · PreprintBioinformatics

Ontology pre-training improves machine learning-based predictions for metabolites

Charlotte Tumescheit, Martin Glauer, Simon Flügel, Martin F. Larralde, Fabian Neuhaus, Till Mossakowski, Janna Hastings

The paper introduces ontology pre-training to improve machine learning predictions for metabolites by integrating bio-ontology knowledge, showing better performance and faster training.

bioRxiv · Sep 30, 2025 · PreprintBioinformatics

Foldseek: fast and accurate protein structure search

Michel van Kempen, Stephanie S. Kim, Charlotte Tumescheit, Milot Mirdita, Jeong-Jae Lee, Cameron L. M. Gilchrist, Johannes Söding, Martin Steinegger

Foldseek's 3Di tertiary-interaction alphabet enables structure search four to five orders of magnitude faster than Dali and TM-align at 86% and 88% of their respective sensitivities.

Nature Biotechnology · May 8, 2023Peer-reviewedBioinformatics✦ In-depth digest

CIAlign - A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments.

Charlotte Tumescheit, Andrew E. Firth, Katherine A. Brown

CIAlign is a command line tool that cleans, interprets, and visualizes multiple sequence alignments by removing problematic regions and providing visual feedback.

PeerJ · Mar 15, 2022Peer-reviewedBioinformatics