Author

Stephanie S. Kim

Seoul National UniversityORCID 0000-0002-5116-0798Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Organism:human· 1

Frequent Co-Authors

Martin SteineggeriD· 2 shared Burkhard RostiD· 1 shared Cameron L. M. GilchristiD· 1 shared Charlotte TumescheitiD· 1 shared Christine Anne OrengoiD· 1 shared Clemens RaueriD· 1 shared Ian SillitoeiD· 1 shared Jeong-Jae LeeiD· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Martin SteineggerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Foldseek: fast and accurate protein structure search

Michel van Kempen, Stephanie S. Kim, Charlotte Tumescheit, Milot Mirdita, Jeong-Jae Lee, Cameron L. M. Gilchrist, Johannes Söding, Martin Steinegger

Foldseek's 3Di tertiary-interaction alphabet enables structure search four to five orders of magnitude faster than Dali and TM-align at 86% and 88% of their respective sensitivities.

Nature Biotechnology · May 8, 2023Peer-reviewedBioinformatics✦ In-depth digest

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie S. Kim, Sameer S Velankar, Martin Steinegger, Burkhard Rost, Christine Anne Orengo

The paper uses AlphaFold2 to analyze protein structures from 21 organisms, identifying 26 novel superfamilies and expanding structural diversity insights.

Communications Biology · Feb 8, 2023Peer-reviewedBioinformatics