Author

Jason D. Simmons

University of WashingtonORCID 0000-0002-7669-2803Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetic & Genomic Medicine· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Catherine M. SteiniD· 2 shared Harriet Mayanja‐KizzaiD· 2 shared Thomas R. HawniD· 2 shared W. Henry BoomiD· 2 shared Hyejeong HongiD· 1 shared Kimberly A. Dill‐McFarlandiD· 1 shared LaShaunda L. Malone· 1 shared Madison S CoxiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Catherine M. SteinORCID

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2 papers

Recent·Most cited

Multi-omic latent variable data integration reveals multicellular structure pathways associated with resistance to tuberculin skin test (TST)/interferon gamma release assay (IGRA) conversion in Uganda

Madison S Cox, Kimberly A. Dill‐McFarland, Jason D. Simmons, Penelope H. Benchek, Harriet Mayanja‐Kizza, W. Henry Boom, Catherine M. Stein, Thomas R. Hawn

The paper integrates multi-omic data to identify latent factors associated with resistance to TB conversion, revealing pathways related to multicellular structure and cell-cell interactions.

BMC Genomics · Mar 18, 2025Peer-reviewedGenomics

Tuberculosis severity associates with variants and eQTLs related to vascular biology and infection-induced inflammation

Michael L. McHenry, Jason D. Simmons, Hyejeong Hong, LaShaunda L. Malone, Harriet Mayanja‐Kizza, William S. Bush, W. Henry Boom, Thomas R. Hawn, Scott M. Williams, Catherine M. Stein

This paper identifies genetic variants and eQTLs associated with TB severity, linking them to vascular biology and inflammation, using GWAS and eQTL analyses in TB patients.

PLoS Genetics · Mar 27, 2023Peer-reviewedGenetic & Genomic Medicine