Author

Agnieszka Kalinowski

Stanford MedicineORCID 0000-0002-7678-4337Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander Eckehart UrbaniD· 2 shared Reenal PattniiD· 2 shared Aitor Serres· 1 shared Alexej Abyzov· 1 shared Alexej S. AbyzoviD· 1 shared Alice E. LeeiD· 1 shared Alissa M. D’GamaiD· 1 shared Alon GaloriD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Alexander Eckehart UrbanORCID

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2 papers

Recent·Most cited

Peripheral Complement C4 Protein in Schizophrenia: Association with Gene Copy Number and Immune Cell Subtypes

Agnieszka Kalinowski, Claudia Macaubas, Hanmin Guo, Lauren A. Anker, Diane E. Wakeham, Marcus Ho, Reenal Pattni, Batuhan Bayram, Surbhi Sharma, Joanna Liliental, Jong H. Yoon, Elizabeth Mellins, Lawrence Steinman, Alexander Eckehart Urban

This study identifies C4 protein expression in neutrophils and monocytes in schizophrenia, linking it to C4A gene copy number only in patients.

Proceedings of the National Academy of Sciences · May 11, 2026Peer-reviewedImmunology

Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia

Xiaowei Zhu, Bo Zhou, Reenal Pattni, Kelly Gleason, Chunfeng Tan, Agnieszka Kalinowski, Steven A. Sloan, Anna-Sophie Fiston-Lavier, Jessica Mariani, Dmitri A. Petrov, Ben A. Barres, Laramie E. Duncan, Alexej S. Abyzov, Hannes S. Vogel, Brain Somatic Mosaicism Network, , Gary W. Mathern

The paper introduces a machine learning method to detect somatic L1 insertions in human brain tissue, revealing their widespread distribution in neurons and glia and potential role in neuropsychiatric diseases.

Nature Neuroscience · Jan 11, 2021Peer-reviewedGenomics