Author

Yuansheng Liu

Hunan UniversityORCID 0000-0002-7680-3155Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Xiao LuoiD· 4 shared Enlian CheniD· 3 shared Wenhai ZhangiD· 3 shared Alexander SchönhuthiD· 2 shared Jialu XuiD· 2 shared Guangyi LiiD· 1 shared Jialu XuiD· 1 shared Sisi Yuan· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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4 shared papersBioinformatics

Xiao LuoORCID

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Author profile →

4 papers

Recent·Most cited

Dual-channel graph learning reveals similarity and complementarity in protein-protein interaction networks

Tao Tang, Taiguang Shen, Weizhuo Li, Yangyang Chen, Sisi Yuan, Yuansheng Liu, Xinyu Yang, Xiao Luo

DMG-PPI is a dual-channel graph neural network that models similarity and complementarity in PPI networks, improving prediction accuracy and providing interpretable insights into binding mechanisms.

PLoS Computational Biology · May 20, 2026Peer-reviewedBioinformatics

Strain-level metagenomic profiling using pangenome graphs with PanTax

Wenhai Zhang, Yuansheng Liu, Guangyi Li, Jialu Xu, Enlian Chen, Alexander Schönhuth, Xiao Luo

PanTax improves strain-level metagenomic classification by using pangenome graphs, outperforming existing methods in precision and recall.

Genome Research · Jan 14, 2026Peer-reviewedBioinformatics

PanTax: Strain-level taxonomic classification of metagenomic data using pangenome graphs

Wenhai Zhang, Yuansheng Liu, Jialu Xu, Enlian Chen, Alexander Schönhuth, Xiao Luo

PanTax improves strain-level taxonomic classification of metagenomic data by using pangenome graphs, outperforming existing methods in precision and recall.

bioRxiv · Nov 15, 2024 · PreprintBioinformatics

Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat

Yichen Li, Enlian Chen, Jialu Xu, Wenhai Zhang, Xiangxiang Zeng, Yuansheng Liu, Xiao Luo

DeChat corrects errors in Nanopore R10 sequencing reads with high accuracy, preserving repeats and haplotypes, and improves genome assembly.

bioRxiv · May 9, 2024 · PreprintBioinformatics