Author

Simon Smith

Queensland HealthORCID 0000-0002-7770-3738Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrew R. GreenhilliD· 2 shared Cadhla FirthiD· 2 shared Eike J. SteinigiD· 2 shared Emma Sue McBrydeiD· 2 shared Izzard AgluaiD· 2 shared Lachlan CoiniD· 2 shared Paul F. HorwoodiD· 2 shared William S. PomatiD· 2 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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2 shared papersBioinformatics

Andrew R. GreenhillORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 5, 2022

Genomic neighbor typing for bacterial outbreaksurveillance

Eike J. Steinig, Miranda E. Pitt, Izzard Aglua…·Lachlan Coin

This study introduces Sketchy, a genomic neighbor typing tool for bacterial outbreak surveillance, showing improved lineage prediction but limitations in clade-specific genotype resolution.

2 citations

bacteria (other)whole-genome sequencing

BioinformaticsbioRxivPreprintApr 30, 2021

Phylodynamic modelling of bacterial outbreaks using nanopore sequencing

Eike J. Steinig, Sebastián Duchêne, Izzard Aglua…·Paul F. Horwood

This paper uses nanopore sequencing and Random Forest models to estimate transmission dynamics of MRSA outbreaks, showing sustained transmission with Re > 1.

2 citations

whole-genome sequencingstatistical model