Author

Cadhla Firth

Australian Institute of Tropical Health and MedicineORCID 0000-0002-2040-8973Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrew R. GreenhilliD· 2 shared Eike J. SteinigiD· 2 shared Emma Sue McBrydeiD· 2 shared Izzard AgluaiD· 2 shared Lachlan CoiniD· 2 shared Paul F. HorwoodiD· 2 shared Simon SmithiD· 2 shared William S. PomatiD· 2 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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2 shared papersBioinformatics

Andrew R. GreenhillORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Genomic neighbor typing for bacterial outbreaksurveillance

Eike J. Steinig, Miranda E. Pitt, Izzard Aglua, Annika Suttie, Andrew R. Greenhill, Christopher Stewart Heather, Cadhla Firth, Simon Smith, William S. Pomat, Paul F. Horwood, Emma Sue McBryde, Lachlan Coin

This study introduces Sketchy, a genomic neighbor typing tool for bacterial outbreak surveillance, showing improved lineage prediction but limitations in clade-specific genotype resolution.

bioRxiv · Feb 5, 2022 · PreprintBioinformatics

Phylodynamic modelling of bacterial outbreaks using nanopore sequencing

Eike J. Steinig, Sebastián Duchêne, Izzard Aglua, Andrew R. Greenhill, Rebecca L. Ford, Mition Yoannes, Jan Jaworski, Jimmy Drekore, Bohu Urakoko, Harry Poka, Clive Wurr, Eri Ebos, David Nangen, Moses Laman, Laurens A. Manning, , Paul F. Horwood

This paper uses nanopore sequencing and Random Forest models to estimate transmission dynamics of MRSA outbreaks, showing sustained transmission with Re > 1.

bioRxiv · Apr 30, 2021 · PreprintBioinformatics