Boas C.L. van der Putten

Continued genomic surveillance of Vibrio cholerae O1 isolates from cholera cases in Europe, 2023-2024

The paper uses whole genome sequencing to analyze Vibrio cholerae O1 isolates from 2023-2024 European cholera cases, confirming their lineage and identifying drug-resistant clones.

Genome-wide association reveals host-specific genomic traits in Escherichia coli

This study identifies host-specific genetic determinants in E. coli using genome-wide association, revealing lineage-specific adaptations to human, cattle, chicken, and pig hosts.

Benchmarking topological accuracy of bacterial phylogenomic workflows using in silico evolution

This study benchmarks phylogenetic workflows using simulated bacterial evolution, finding k-mer alignment methods are accurate alternatives to reference mapping and de novo assembly impacts accuracy.

Quantifying the contribution of four resistance mechanisms to ciprofloxacin minimum inhibitory concentration in Escherichia coli: a systematic review

This study quantifies how four resistance mechanisms contribute to ciprofloxacin minimum inhibitory concentration in E. coli using a systematic review of 66 studies.