Author

Witold Remigiusz Rudnicki

University of BiałystokORCID 0000-0002-7928-4944Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:metagenomics· 3 Research Focus:benchmarking· 2 Approach:deep learning· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Paweł P. ŁabajiD· 3 shared Kinga ZielińskaiD· 2 shared Wojciech LesińskiiD· 2 shared Adam GodzikiD· 1 shared Adriano ChiòiD· 1 shared Adrienne O’DonnelliD· 1 shared Agnieszka Kitlas GolińskaiD· 1 shared Alex G. Karanevich· 1 shared

Activity by Year

2019-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Paweł P. ŁabajORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Beyond single markers: bacterial synergies identified by Multidimensional Feature Selection reveal conserved microbiome disease signatures

Kinga Zielińska, Witold Remigiusz Rudnicki, Paweł P. Łabaj

This paper introduces a framework to identify synergistic microbial pairs in metagenomic data that carry more disease information than individual features, showing improved performance in colorectal cancer classification.

bioRxiv · Jun 10, 2026 · PreprintBioinformatics

Antimicrobial Resistance in Diverse Urban Microbiomes: Uncovering Patterns and Predictive Markers

Rodolfo Brizola Toscan, Wojciech Lesiński, Piotr Stomma, Balakrishnan Subramanian, Paweł P. Łabaj, Witold Remigiusz Rudnicki

This study analyzes AMR in urban microbiomes using metagenomic data, finding that AMR++ and Bowtie are effective for detecting AMR genes and that MGEs significantly impact resistome modeling.

Frontiers in Genetics · Jan 29, 2025Peer-reviewedMicrobiology

Healthy microbiome - moving towards functional interpretation

Kinga Zielińska, Klas I. Udekwu, Witold Remigiusz Rudnicki, Alina Frolova, Paweł P. Łabaj

This study introduces a new metagenomic health index to assess microbiome health by focusing on functional potential rather than taxonomy, showing improved performance in distinguishing healthy from diseased states.

GigaScience · Jan 1, 2025Peer-reviewedBioinformatics

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Robert Kueffner, Neta Zach, Maya Bronfeld, Raquel Norel, Nazem Atassi, Venkatachalapathy S. K. Balagurusamy, Barbara Di Camillo, Adriano Chiò, Merit Cudkowicz, Donna Eng Dillenberger, Javier Garcı́a-Garcı́a, Orla M. Hardiman, Bruce Hoff, Joshua Knight, Melanie L. Leitner, , Shihua Zhang

This study uses a crowdsourcing approach to stratify ALS patients, identifying four distinct clusters with unique predictors and improving outcome prediction.

Scientific Reports · Jan 24, 2019Peer-reviewedBioinformatics