Paweł P. Łabaj

This paper introduces a framework to identify synergistic microbial pairs in metagenomic data that carry more disease information than individual features, showing improved performance in colorectal cancer classification.

This study compares taxonomic and functional profiles of human gut microbiome samples sequenced on two platforms, finding high taxonomic concordance but functional discrepancies.

This paper introduces a hybrid training model to enhance bioinformatics capacity globally, demonstrating its effectiveness through an Eastern European workshop series.

This study shows high-altitude mountaineering alters gut microbiome composition and function, linked to dietary intake and performance markers in alpinists.

This study integrates metagenomic and blood biomarker data to show that aerobic and anaerobic exercise elicit distinct metabolic responses mediated by the gut microbiome in athletes and non-athletes.

This study analyzes AMR in urban microbiomes using metagenomic data, finding that AMR++ and Bowtie are effective for detecting AMR genes and that MGEs significantly impact resistome modeling.

This study introduces a new metagenomic health index to assess microbiome health by focusing on functional potential rather than taxonomy, showing improved performance in distinguishing healthy from diseased states.

The paper functionally annotates genomes of ISS-isolated bacteria and identifies adaptations to space conditions through comparative genomics and proteome analysis.

This study examines gut microbiome changes in hospitalized COVID-19 patients using shallow and deep shotgun sequencing to assess their predictive value for clinical outcomes.

The paper investigates mitochondrial dysfunction in iPSC-derived dopaminergic neurons from idiopathic Parkinson's disease patients, finding reduced mitochondrial fitness and ATP availability linked to decreased neuronal excitability.

CAMP provides a modular metagenomics analysis system that enables scalable, extensible workflows with integrated data visualization and reporting.

The paper evaluates epigenetic methods using reference materials, finding high concordance between assays and differences in performance across platforms.