Author

Anna C. Salzberg

Pennsylvania State UniversityORCID 0000-0002-7938-5577Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Craig MeyersiD· 1 shared Elizabeth J. Conroy· 1 shared Georgina V. Bixler· 1 shared Janice MiliciiD· 1 shared Jiafen HuiD· 1 shared Nancy M. CladeliD· 1 shared Robert M. Brucklacher· 1 shared Sa Do KangiD· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Craig MeyersORCID

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2 papers

Recent·Most cited

The Effect of Productive HPV16 Infection on Global Gene Expression of Cervical Epithelium

Sa Do Kang, Sreejata Chatterjee, Samina Alam, Anna C. Salzberg, Janice Milici, Sjoerd H. van der Burg, Craig Meyers

This study identifies global gene expression changes in early-stage HPV16 infection in cervical tissue, revealing distinct transcriptomes compared to cancerous stages and potential therapeutic targets.

Journal of Virology · Jul 26, 2018Peer-reviewedGenomics

Effects of duplicated mapped read PCR artifacts on RNA-seq differential expression analysis based on qRNA-seq

Anna C. Salzberg, Jiafen Hu, Elizabeth J. Conroy, Nancy M. Cladel, Robert M. Brucklacher, Georgina V. Bixler, Yuka Imamura Kawasawa

The paper evaluates the impact of PCR duplicates on RNA-seq differential expression analysis using qRNA-seq and finds that handling duplicates significantly improves sensitivity and specificity for single-end reads.

bioRxiv · Apr 13, 2018 · PreprintGenomics