Michał Karlicki

Microbial communities in Phragmites australis biofilms from Masurian lakes (Poland) with varying trophic states

The paper examines microbial communities in Phragmites australis biofilms and planktonic fractions across lakes with different trophic states, finding distinct biofilm communities with unique core microbiomes and higher physiological activity.

From short to long reads: enhanced protist diversity profiling via Nanopore metabarcoding

This paper introduces BaNaNA, a pipeline for generating high-quality OTUs from Nanopore long-read sequencing data, showing its effectiveness for protist biodiversity studies and its advantages over short-read methods.

Tiara: Deep learning-based classification system for eukaryotic sequences

Tiara is a deep learning tool for classifying eukaryotic sequences in metagenomics, outperforming existing methods for eukaryotes and correctly classifying organellar sequences.