Fabrice Not

Seasonal patterns in Synechococcus pigment diversity at two temperate sites with contrasting oceanic regimes

This study examines seasonal pigment diversity in Synechococcus at two temperate ocean sites, revealing distinct patterns linked to environmental factors and ecological niches.

From short to long reads: enhanced protist diversity profiling via Nanopore metabarcoding

This paper introduces BaNaNA, a pipeline for generating high-quality OTUs from Nanopore long-read sequencing data, showing its effectiveness for protist biodiversity studies and its advantages over short-read methods.

Diversity and evolution of Radiolaria: Beyond the stars of the ocean

This study assesses the diversity, biogeography, and evolutionary history of Radiolaria using morpho-molecular analyses, revealing significant undescribed diversity and key evolutionary events.

Single-cell transcriptomics highlights sexual cues among reproductive life stages of uncultivated Acantharia (Radiolaria)

This study uses single-cell transcriptomics to analyze reproductive life stages of Acantharia, identifying genetic evidence for a sexual cycle involving gamete-like swarmers.

Patterns and drivers of diatom diversity and abundance in the global ocean

This study analyzes diatom diversity and abundance in the global ocean using Tara Oceans data, identifying key environmental drivers and community patterns.

The give and take in photosymbiosis unraveled by metabolomics of Radiolaria

This study uses metabolomics to analyze the metabolic interactions between Radiolaria and their symbiotic microalgae, revealing host and symbiont contributions to the holobiont's metabolism.

Beyond the limits of the unassigned protist microbiome: inferring large-scale spatio-temporal patterns of marine parasites

The paper develops a computational workflow to analyze unassigned protist genetic barcodes across marine surveys, identifying spatio-temporal patterns in Syndiniales parasites.

Intra-genomic rDNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing

The paper compares Sanger, Illumina, and MinION sequencing methods to assess intra-genomic rDNA variability in Nassellaria and Spumellaria, finding low variability but some Spumellaria specimens with divergent V4 copies.

Morpho-molecular diversity and evolutionary analyses suggest hidden life styles in Spumellaria (Radiolaria)

This study classifies Spumellaria using morphological and molecular data, revealing hidden diversity and re-evaluating taxonomic classification based on skeletal symmetry.

Time calibrated morpho-molecular classification of Nassellaria (Radiolaria)

This paper presents a morpho-molecular classification of Nassellaria using 18S and 28S rDNA and morphology, estimating their origin and diversification using a fossil-calibrated molecular clock.

A de novo approach to disentangle partner identity and function in holobiont systems

The paper introduces a method to separate host and symbiont reads in holobiont transcriptomes, improving assembly quality and enabling functional analysis.

Analysis Of The Genomic Basis Of Functional Diversity In Dinoflagellates Using A Transcriptome-Based Sequence Similarity Network

The paper uses a sequence similarity network to analyze dinoflagellate transcriptomes, identifying novel protein domains linked to toxicity and symbiosis.

Chloroplasts of symbiotic microalgae remain active during bleaching induced by thermal stress in Collodaria (Radiolaria)

This study examines temperature-induced bleaching in Collodaria by analyzing symbiont density, photosynthetic capacity, and respiration rates under varying thermal stress conditions.