Author

Carles Hernandéz-Ferrer

Barcelona Supercomputing CenterORCID 0000-0002-8029-7160Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Adam FrankishiD· 1 shared Alejandro PaniaguaiD· 1 shared Alessandra Martinez-Martin· 1 shared Ali MortazaviiD· 1 shared Alison D. TangiD· 1 shared Alla MikheenkoiD· 1 shared Alyssa Cousineau· 1 shared Amit K. BeheraiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Adam FrankishORCID

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3 papers

Recent·Most cited

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams, Jane E. Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, José M. González, Toby Hunt, Julien Lagarde, Cindy Liang, , Angela Norie Brooks

Benchmarking six long-read RNA-seq protocol-platform combinations and 14 tools across human, mouse, and manatee shows read length and accuracy drive isoform detection, depth drives quantification.

Nature Methods · Jun 7, 2024Peer-reviewedGenomics✦ In-depth digest

Identification of blood autosomal cis-expression quantitative trait methylation (cis-eQTMs) in children

Carlos Ruiz-Arenas, Carles Hernandéz-Ferrer, Marta Vives-Usano, Sergi Marí, Inés Quintela, Dan Mason, Solène Cadiou, Maribel Casas, Sandra Andrušaitytė, Kristine Bjerve Gutzkow, Marina Vafeiadi, John Wright, Johanna Lepeule, Regina Grazuleviciene, Leda Chatzi, , Mariona Bustamante

This paper identifies 39,749 autosomal cis-eQTMs in children's blood using HELIX data, showing most are near genes and many have genetic variants associated with methylation and expression.

eLife · Feb 14, 2022Peer-reviewedGenomics

WEScover: selection of whole exome sequencing vs. gene panel testing

In‐Hee Lee, Yufei Lin, William Jefferson Alvarez, Carles Hernandéz-Ferrer, Kenneth D. Mandl, Sek Won Kong

WEScover assesses exome coverage for genes of interest and recommends gene panel testing when WES coverage is insufficient.

BMC Bioinformatics · May 20, 2021Peer-reviewedBioinformatics