This study presents a haplotype-resolved genome assembly and variation map of Rosa hybrida, revealing domestication history and genetic contributions from wild species.

58 citationstop 1%

plant (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsHorticulture ResearchPeer-reviewedApr 1, 2024

HortGenome Search Engine, a universal genomic search engine for horticultural crops

Sen Wang, Shangxiao Wei, Yuling Deng…·Yi Zheng

HortGenome Search Engine provides a unified platform for querying and analyzing genomic data across 400+ horticultural crops, with tools for BLAST, batch query, enrichment analysis, and synteny viewing.

4 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

GenomicsPLoS ONEPeer-reviewedMay 12, 2022

The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato

Chellappan Padmanabhan, Yi Zheng, Md Shamimuzzaman…·Kai‐Shu Ling

This study identifies differentially expressed genes in tomato plants expressing the TYLCV C4 protein, linking them to leaf cupping symptoms.

18 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

Developmental BiologyCurrent BiologyPeer-reviewedJun 11, 2020

Identification of conserved gene regulatory networks that integrate environmental sensing and growth in the root cambium

Nam V. Hoang, Goh Choe, Yi Zheng…·J.Y. Lee

This study identifies conserved gene regulatory networks in the root cambium of radish and Arabidopsis that link environmental sensing to growth, highlighting ERF-1 as a key regulator.

48 citations

Arabidopsisrat

𝕏 PostBluesky