Ching-Hao Wang

Simple Causal Relationships in Gene Expression Discovered through Deep Learned Collective Variables

The paper develops a deep learning approach to identify simple causal relationships in gene expression by finding low-dimensional representations that predict genetic perturbation responses.

The strength of protein-protein interactions controls the information capacity and dynamical response of signaling networks

The paper develops a framework linking protein-protein interaction strength to information transmission and dynamical response in signaling networks, finding a speed-information trade-off.