Author

Alexandre Oliveira

LabbelsORCID 0000-0002-2255-8983Unclaimed ORCID profile · follow to get notified of new preprints

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Alexandre Oliveira1 paper · Universidade de São Paulo

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Emanuel CunhaiD· 2 shared Óscar DiasiD· 2 shared Alina RenziD· 1 shared Andreas DrägeriD· 1 shared Arianna BasileiD· 1 shared Aswathy K. RaghuiD· 1 shared Bhanwar Lal PuniyaiD· 1 shared Brett G. OlivieriD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersSystems Biology

Emanuel CunhaORCID

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2 papers

Recent·Most cited

FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models

Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, Tung V. N. Nguyen, Daniel Lobo, St. Elmo Wilken, Krishna Kumar Tiwari, Aswathy K. Raghu, Indumathi Palanikumar, Lavanya Raajaraam, Maziya Ibrahim, Sanjaay Balakrishnan, , Rahuman S. Malik‐Sheriff

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

bioRxiv · Sep 24, 2024 · PreprintSystems Biology

An updated genome-scale model for Xylella fastidiosa subsp. pauca De Donno

Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Óscar Dias

The paper updates a genome-scale metabolic model for Xylella fastidiosa subsp. pauca, validating it against experimental data for aerobic metabolism and gum production.

bioRxiv · Nov 28, 2022 · PreprintBioinformatics