Author

John A. Henning

Agricultural Research ServiceORCID 0000-0002-8310-2066Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:plant (other)· 4 Approach:statistical model· 3 Research Focus:genome assembly· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Lillian K. Padgitt‐CobbiD· 3 shared David A. HendrixiD· 2 shared Sarah B. KinganiD· 2 shared Alexandra McElwee‐Adame· 1 shared Alexis Dockter· 1 shared Amran Mohamed· 1 shared Arun SethuramaniD· 1 shared Brent A. KronmilleriD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersGenomics

Lillian K. Padgitt‐CobbORCID

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4 papers

Recent·Most cited

Evolutionary BiologyMolecular EcologyPeer-reviewedApr 24, 2025

Evolutionary history and rhizosphere microbial community composition in domesticated hops (Humulus lupulus L.)

Alexandra McElwee‐Adame, Raya Esplin, Trevor Mugoya…·Arun Sethuraman

This study investigates the evolutionary history and rhizosphere microbial communities of 98 hop cultivars, revealing four subpopulations and differences in growth and microbial composition between US and non-US cultivars.

4 citations

plant (other)metagenomics

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 24, 2022

A chromosome-level assembly of the "Cascade" hop (Humulus lupulus) genome uncovers signatures of molecular evolution and improves time of divergence estimates for the Cannabaceae family

Lillian K. Padgitt‐Cobb, Nicholi J. Pitra, Paul D. Matthews…·David A. Hendrix

The paper presents a chromosome-level assembly of the Cascade hop genome, identifies sex chromosomes, and reveals molecular evolution patterns in the Cannabaceae family.

4 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsThe Plant GenomePeer-reviewedFeb 18, 2021

A phased, diploid assembly of the Cascade hop (Humulus lupulus) genome reveals patterns of selection and haplotype variation

Lillian K. Padgitt‐Cobb, Sarah B. Kingan, Jackson Wells…·David A. Hendrix

The paper presents a phased diploid assembly of the Cascade hop genome, revealing patterns of selection and haplotype variation, and identifies a homolog of CBDAS.

60 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsEuphyticaPeer-reviewedDec 23, 2019

Genomic Analysis of Powdery Mildew Resistance in a Hop (Humulus lupulus L.) Bi-parental Population Segregating for R6-locus

Lillian K. Padgitt‐Cobb, Sarah B. Kingan, John A. Henning

The paper re-evaluates powdery mildew resistance in hop using QTL analysis and RNAseq, identifying genomic regions and gene expression patterns associated with resistance to races v4/v6.

18 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky