Author

Adeeb H Rahman

Icahn School of Medicine at Mount SinaiORCID 0000-0002-8620-3161Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1

Frequent Co-Authors

Alison Deckhut AugustineiD· 2 shared Ana Fernández-SesmaiD· 2 shared Bali PulendraniD· 2 shared Bjoern PetersiD· 2 shared David A. HafleriD· 2 shared Elaine F. ReediD· 2 shared Elias K. HaddadiD· 2 shared Jeremy P. GygiiD· 2 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Alison Deckhut AugustineORCID

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Author profile →

3 papers

Recent·Most cited

A ML-framework for the discovery of next-generation IBD targets using a harmonized single-cell atlas of patient tissue

Anoushka Joglekar, Ann Joseph, Pavel Honsa, Klara Ruppova, Veronica Pizzarella, Amanda M. Honan, Devin Mediratta, Emily Vollmer, Evan T. Geller, Martin Valný, Eva Macuchova, Shiwei Zheng, Alisa Greenberg, Petr Tauš, Alina R. Kline-Schoder, , Adeeb H Rahman

The paper develops a machine learning framework to identify cell type-specific gene targets for IBD using a harmonized single-cell atlas and validates them experimentally.

bioRxiv · May 10, 2026 · PreprintBioinformatics

Unraveling SARS-CoV-2 Host-Response Heterogeneity through Longitudinal Molecular Subtyping

Kexin Wang, Yutong Nie, Cole P. Maguire, Caitlin Syphurs, Heejune Sheen, Meagan Karoly, Linda Lapp, Jeremy P. Gygi, Naresh Doni Jayavelu, Ravi K. Patel, Annmarie Hoch, IMPACC Network, David Brian Corry, Farrah Kheradmand, Grace A. McComsey, , Leying Guan

This study identifies immune subtypes in hospitalized COVID-19 patients linked to clinical outcomes and long COVID risk through longitudinal multi-omics analysis.

bioRxiv · Nov 22, 2024 · PreprintImmunology

The Immune Signatures Data Resource: A compendium of systems vaccinology datasets

Joann Diray‐Arce, Helen E. R. Miller, Evan Henrich, Bram Gerritsen, Matthew P. Mulè, Slim Fourati, Jeremy P. Gygi, Thomas Hagan, Lewis E. Tomalin, Dmitry Rychkov, Dmitri A. Kazmin, Daniel G. Chawla, Hailong Meng, Patrick J. Dunn, John Campbell, , Mayte Suárez‐Fariñas

The paper introduces the Immune Signatures Data Resource, a compendium of standardized systems vaccinology datasets for comparative vaccine response analysis.

Scientific Data · Oct 20, 2022Peer-reviewedSystems Biology