Author

Martin Valný

Czech Academy of Sciences, Institute of Experimental MedicineORCID 0000-0002-7862-4601Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Adam PlattiD· 1 shared Adeeb H RahmaniD· 1 shared Aleksandra WroblewskaiD· 1 shared Alina R. Kline-SchoderiD· 1 shared Alisa Greenberg· 1 shared Amanda M. Honan· 1 shared Ana Laura MoldoveanuiD· 1 shared Ann Joseph· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Adam PlattORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 10, 2026

A ML-framework for the discovery of next-generation IBD targets using a harmonized single-cell atlas of patient tissue

Anoushka Joglekar, Ann Joseph, Pavel Honsa…·Adeeb H Rahman

The paper develops a machine learning framework to identify cell type-specific gene targets for IBD using a harmonized single-cell atlas and validates them experimentally.

DOI 10.64898/2026.02.06.699999

humanscRNA-seq

GenomicsCell ReportsPeer-reviewedJun 1, 2020

Decoding the transcriptional response to ischemic stroke in young and aged mouse brain

Peter Androvic, Denisa Kirdajová, Jana Turečková…·Lukáš Valihrach

The paper analyzes RNA-Seq data from young and aged mice after ischemic stroke to identify age-related transcriptional changes and inflammatory responses.

118 citationstop 3%

mousebulk RNA-seq