Author

Chao Chun Liu

University of British ColumbiaORCID 0000-0002-8645-2598Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Organism:human· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Paul PavlidisiD· 2 shared Alexander M. MoriniD· 1 shared Aman SharmaiD· 1 shared Brandon HuntingtoniD· 1 shared Ellie Hogan· 1 shared Eric Ching-Pan ChuiD· 1 shared James LiuiD· 1 shared Minh Phan· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Paul PavlidisORCID

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3 papers

Recent·Most cited

GenomicsMicrobial GenomicsPeer-reviewedDec 7, 2022

Large-scale comparative genomics of Salmonella enterica to refine the organization of the global Salmonella population structure

Chao Chun Liu, William Hsiao

This paper analyzes 180,098 Salmonella genomes to refine genomic typing nomenclature by identifying polyphyletic serovars and proposing a stable population structure based on core genome MLST thresholds.

8 citations

bacteria (other)whole-genome sequencing

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GenomicsPLoS Computational BiologyPeer-reviewedOct 19, 2021

Experiment level curation identifies high confidence transcriptional regulatory interactions in neurodevelopment

Eric Ching-Pan Chu, Alexander M. Morin, Tak Hou Calvin Chang…·Paul Pavlidis

This study curates experimentally verified transcriptional regulatory interactions from literature to build a high-confidence resource for gene regulatory network development.

6 citations

humanbulk RNA-seq

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Molecular BiologyBMC GenomicsPeer-reviewedAug 28, 2018

Systematic evaluation of isoform function in literature reports of alternative splicing

Shamsuddin A. Bhuiyan, Sophia M. Ly, Minh Phan…·Paul Pavlidis

The paper evaluates the functional significance of splice isoforms in human and mouse genes, finding limited experimental evidence for functionally distinct splice isoforms.

60 citations

humanmouse

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