Author

Vedbar S. Khadka

University of Hawaiʻi at MānoaORCID 0000-0002-8652-2904Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:Drosophila· 1 Assay:spatial transcriptomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Jiannong XuiD· 1 shared K. NakatsuiD· 1 shared Kai HuiD· 1 shared Masaki Nasu· 1 shared Matthew Huo· 1 shared Mayumi JijiwaiD· 1 shared Michelle M. RiehleiD· 1 shared Youping DengiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperMolecular Biology

Jiannong XuORCID

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2 papers

Recent·Most cited

Transcriptome-based identification of long noncoding RNAs (lncRNAs) across the genome of Anopheles gambiae

Jiannong Xu, Kai Hu, Michelle M. Riehle, Vedbar S. Khadka

The paper identifies 2684 lncRNA genes in Anopheles gambiae using RNA-seq data and analyzes their expression and regulatory roles across different biological contexts.

bioRxiv · Oct 2, 2024 · PreprintMolecular Biology

sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data

K. Nakatsu, Mayumi Jijiwa, Vedbar S. Khadka, Masaki Nasu, Matthew Huo, Youping Deng

sRNAfrag quantifies and analyzes small RNA fragmentation across biotypes, detecting miRNA and snoRNA fragment conservation across species.

Briefings in Bioinformatics · Nov 22, 2023Peer-reviewedBioinformatics